ABSTRACT: We continue to consider one of the cybernetic methods in biology related to the study of DNA chains. Exactly, we are considering the problem of reconstructing the distance matrix for DNA ...

We are living in an era where biology has become synonymous with big data due to the ever-increasing amount of data being generated by technologies such as next-generation sequencing. Bioinformatics ...

In bioinformatics, one of the most important problems is comparing biological sequences such as DNA, RNA, or proteins. Since these sequences are often very long, manual comparison is practically ...

parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and various semi-global pairwise sequence alignment algorithms. Here, ...

This package contains Python bindings for parasail. Parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and semi-global pairwise ...

Extracellular matrices direct the formation of mineral constituents into self-assembled mineralized tissues. We investigate the protein and mineral constituents to better understand the underlying ...

Environmental DNA (eDNA) is becoming an increasingly important tool in diverse scientific fields from ecological biomonitoring to wastewater surveillance of viruses. The fundamental challenge in eDNA ...

Text similarity is a fundamental concept in natural language processing (NLP) that measures how similar two pieces of text are. This measure is crucial in various applications, such as search engines, ...

Creative Commons (CC): This is a Creative Commons license. Attribution (BY): Credit must be given to the creator. While the acquisition of cryo-electron microscopy (cryo-EM) at near-atomic resolution ...

Edit distance—a classical problem in computer science—has received ongoing attention from both practitioners and theoreticians. Given two strings A and B, the edit distance is the minimum number of ...