IEEE

Optimizing Query-by-Example Spoken Term Detection with Audio-to-Token Sequence Clustering and Query-Guided Retrieval

Abstract: Query-by-Example Spoken Term Detection (QbE-STD) retrieves relevant audio files corresponding to a spoken query, without relying on explicit word-level textual transcriptions. In ...
Nature

Fast and accurate multiple-protein-sequence alignment at scale with FAMSA2

We introduce FAMSA2, an algorithm that produces high-accuracy multiple-protein-sequence alignments at high speed. Across structural, phylogenetic and functional benchmarks, FAMSA2 matches or exceeds ...
Case Western Reserve University

Magnetic Resonance Imaging (MRI) of the Brain and Spine: Basics

Magnetic resonance imaging (MRI) is one of the most commonly used tests in neurology and neurosurgery. MRI provides exquisite detail of brain, spinal cord and vascular anatomy, and has the advantage ...
IEEE

Align While Fusion: A Generalized Nonaligned Multiview Multilabel Classification Method

Abstract: In the task of multiview multilabel (MVML) classification, each object is described by several heterogeneous view features and annotated with multiple relevant labels. Existing MVML methods ...
GitHub

FlexiDot: Highly customizable, ambiguity-aware dotplots for visual sequence analyses

FlexiDot is a cross-platform dotplot suite generating high quality self, pairwise and all-against-all visualizations of transposons and other discrete sequences. To improve dotplot suitability for ...
GitHub

abPOA: adaptive banded Partial Order Alignment

wget https://github.com/yangao07/abPOA/releases/download/v1.5.6/abPOA-v1.5.6.tar.gz tar -zxvf abPOA-v1.5.6.tar.gz && cd abPOA-v1.5.6 abPOA is an extended version of ...
Microsoft

SNAP – Scalable Nucleotide Alignment Program

SNAP is a program that is part of a gene sequencing pipeline. It takes data from gene sequencing hardware that consists of short chunks of DNA (typically 70-300 base pairs long) called reads and ...
ITU

Coordinated Universal Time: An overview

Coordinated Universal Time (UTC) is the worldwide reference time scale computed by the Bureau international des poids et mesures (BIPM) − the international organization dealing with matters related to ...
Nature

CopulaNet: Learning residue co-evolution directly from multiple sequence alignment for protein structure prediction

Residue co-evolution has become the primary principle for estimating inter-residue distances of a protein, which are crucially important for predicting protein structure. Most existing approaches ...
Frontiers

Comparison of Short-Read Sequence Aligners Indicates Strengths and Weaknesses for Biologists to Consider

Aligning short-read sequences is the foundational step to most genomic and transcriptomic analyses, but not all tools perform equally, and choosing among the growing body of available tools can be ...
Frontiers

A Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence Data

The microbiome can be defined as the community of microorganisms that live in a particular environment. Metagenomics is the practice of sequencing DNA from the genomes of all organisms present in a ...